Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
CTCF

Cell type

Cell type Class
Blood
Cell type
Monocytes-CD14+
Tissue
monocytes
Lineage
mesoderm
Description
Monocytes-CD14+ are CD14-positive cells from human leukapheresis production, from donor RO 01746 (draw 1 ID is RO 01746, draw 2 ID is RO 01826), newly promoted to tier 2: not in 2011 analysis

Attributes by original data submitter

Sample

age
30 year
sample type
primary cell
cell type
CD14-positive monocyte
sex
male
dev stage
adult
donor ID
ENCDO544CHQ
lab
Bradley Bernstein, Broad
source
Charles Lee

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
general protocol: https://www.encodeproject.org/documents/be2a0f12-af38-430c-8f2d-57953baab5f5/@@download/attachment/Epigenomics_Alternative_Mag_Bead_ChIP_Protocol_v1.1_exp.pdf

Sequencing Platform

instrument_model
NextSeq 500

hg38

Number of total reads
38829171
Reads aligned (%)
95.7
Duplicates removed (%)
10.0
Number of peaks
26963 (qval < 1E-05)

hg19

Number of total reads
38829171
Reads aligned (%)
94.8
Duplicates removed (%)
11.2
Number of peaks
26649 (qval < 1E-05)

Base call quality data from DBCLS SRA